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nebnext quick ligation reaction buffer  (New England Biolabs)


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    Structured Review

    New England Biolabs nebnext quick ligation reaction buffer
    Nebnext Quick Ligation Reaction Buffer, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 98/100, based on 597 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/quick+ligation+buffer/NEBNext+Quick+Ligation+Reaction+Buffer/bio_rxiv__64898__2026__10__14__759216-309-25-25
    Average 98 stars, based on 597 article reviews
    nebnext quick ligation reaction buffer - by Bioz Stars, 2026-11
    98/100 stars

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    Related Articles

    Ligation:

    Article Title: Cohesin organizes 3D DNA contacts surrounding active enhancers in C. elegans .
    Article Snippet: In mammals, cohesin and CTCF organize the 3D genome into topologically associating domains (TADs) to regulate communication between cis-regulatory elements.. Many organisms, including S. cerevisiae, C. elegans, and A. thaliana contain cohesin but lack CTCF.. Here, we used C. elegans to investigate the function of cohesin in 3D genome organization in the absence of CTCF.

    Article Title: ECHOS enables spatial epigenome profiling at subcellular resolution
    Article Snippet: Following digestion, DNA was purified using the NucleoSpin Gel and PCR Clean-Up kit (Takara, 740609) and eluted in 10–16 μL nuclease-free water. .. Ligation was then performed using pre-assembled indexed oligos (e.g., PSS_DNA_IDX_S501–S506) with T4 DNA ligase (NEB, M0202) in Quick Ligation buffer at 22 °C for 1 h. After ligation, PCR was performed using Q5 High-Fidelity DNA polymerase (NEB, M0494L) by following the program: 72°C for 5min, 98°C for 30 s; 5 cycles of 98°C for 10 s and 72°C for 90 s, 72°C for 2 min. ..

    Article Title: Validation of High-throughput Oxford Nanopore Technology for HIV-1 Transmitted/Founder Virus Identification.
    Article Snippet: .. Each end-repaired amplicon, including the no-template negative control, was barcoded in a 25 μL reaction comprising 2.5 μL of one of 24 native barcodes (Oxford Nanopore Technologies), 5 μL of T4 DNA Ligase (NEB, Cat. M2200L), 6 μL of Quick Ligation Buffer (NEB, Cat. B6058L), and nuclease-free water (Ambion, Cat. AM9937) to volume. ..

    Article Title: Topologically Associating Domains Define the 3D Genome Architecture of Mouse Totipotent-like Stem Cells.
    Article Snippet: .. Proximity fragments were ligated at 16 °C overnight by adding Quick ligation buffer (NEB, B6058S), T4 DNA ligase (NEB, M0202L), bridge linker (Forward strand: 5'-/5Phos/TAGGCGCTGG/iBIOdT/TGCGTTGT3', reverse strand: 5'-/5Phos/CAACGCAACCAGCGCCTAT-3'), and ddH2O. .. The supernatant was discarded, then pellets were resuspended in proteinase K (Thermo, AM2548) and SDS for reverse-crosslinking by shaking for 2 h at 65 °C.

    Article Title: Tri-omic single-cell mapping of the 3D epigenome and transcriptome in whole mouse brains throughout the lifespan.
    Article Snippet: Exploring the genomic basis of transcriptional programs has been a long-standing research focus.. Here we report a single-cell method, ChAIR, to map chromatin accessibility, chromatin interactions and RNA expression simultaneously.. After validating in cultured cells, we applied ChAIR to whole mouse brains and delineated the concerted dynamics of epigenome, three-dimensional (3D) genome and transcriptome during maturation and aging.

    Article Title: Nanopore direct RNA sequencing of human transcriptomes reveals the complexity of mRNA modifications and crosstalk between regulatory features.
    Article Snippet: .. 9 μL RNA was mixed with 3μL Quick Ligation Buffer [NEB, E6056], 0.5μL RNA CS – spike in, 1μL RTA adaptor and 1.5μL T4 DNA Ligase [NEB, E6056] for 10 min at room temperature. .. Then, a first strand synthesis reaction was initiated using 2μL 10mM dNTPs [NEB, N0447], 8μL first-strand buffer and 2μL Maxima H-Minus reverse transcriptase [Thermo, EP0752] in a final reaction volume of 40μL.

    Article Title: A nanopore-based HIV-1 reference epitranscriptome.
    Article Snippet: .. The RT Adapter was ligated by adding 3 μl of 5 × Quick Ligation Buffer (New England Biolabs, NEB), 2 μl of T4 DNA ligase at 2000 U/ μl (NEB), 1 μl SUPERase ·In RNase Inhibitor (20 U/ μl) (Thermo Fisher Scientific), and incubated at room temperature for 15 min. RT was performed using a master mix containing 1 × First-Strand Buffer, 10 mM DTT, 0.5 mM dNTPs, and nuclease-free water. .. The master mix was added to the RT adapter-ligated RNA, followed by the addition of SuperScript III Reverse Transcriptase (Thermo Fisher Scientific).

    Polymerase Chain Reaction:

    Article Title: ECHOS enables spatial epigenome profiling at subcellular resolution
    Article Snippet: Following digestion, DNA was purified using the NucleoSpin Gel and PCR Clean-Up kit (Takara, 740609) and eluted in 10–16 μL nuclease-free water. .. Ligation was then performed using pre-assembled indexed oligos (e.g., PSS_DNA_IDX_S501–S506) with T4 DNA ligase (NEB, M0202) in Quick Ligation buffer at 22 °C for 1 h. After ligation, PCR was performed using Q5 High-Fidelity DNA polymerase (NEB, M0494L) by following the program: 72°C for 5min, 98°C for 30 s; 5 cycles of 98°C for 10 s and 72°C for 90 s, 72°C for 2 min. ..

    Amplification:

    Article Title: Validation of High-throughput Oxford Nanopore Technology for HIV-1 Transmitted/Founder Virus Identification.
    Article Snippet: .. Each end-repaired amplicon, including the no-template negative control, was barcoded in a 25 μL reaction comprising 2.5 μL of one of 24 native barcodes (Oxford Nanopore Technologies), 5 μL of T4 DNA Ligase (NEB, Cat. M2200L), 6 μL of Quick Ligation Buffer (NEB, Cat. B6058L), and nuclease-free water (Ambion, Cat. AM9937) to volume. ..

    Negative Control:

    Article Title: Validation of High-throughput Oxford Nanopore Technology for HIV-1 Transmitted/Founder Virus Identification.
    Article Snippet: .. Each end-repaired amplicon, including the no-template negative control, was barcoded in a 25 μL reaction comprising 2.5 μL of one of 24 native barcodes (Oxford Nanopore Technologies), 5 μL of T4 DNA Ligase (NEB, Cat. M2200L), 6 μL of Quick Ligation Buffer (NEB, Cat. B6058L), and nuclease-free water (Ambion, Cat. AM9937) to volume. ..

    In Situ:

    Article Title: Tri-omic single-cell mapping of the 3D epigenome and transcriptome in whole mouse brains throughout the lifespan.
    Article Snippet: Exploring the genomic basis of transcriptional programs has been a long-standing research focus.. Here we report a single-cell method, ChAIR, to map chromatin accessibility, chromatin interactions and RNA expression simultaneously.. After validating in cultured cells, we applied ChAIR to whole mouse brains and delineated the concerted dynamics of epigenome, three-dimensional (3D) genome and transcriptome during maturation and aging.

    other:

    Article Title: Topologically associating domains define the 3D genome architecture of mouse totipotent-like stem cells
    Article Snippet: The chromatin was digested with AluI (NEB, R0137L) and HpyCH4V (NEB, R0620L) at 37 °C overnight.

    Incubation:

    Article Title: A nanopore-based HIV-1 reference epitranscriptome.
    Article Snippet: .. The RT Adapter was ligated by adding 3 μl of 5 × Quick Ligation Buffer (New England Biolabs, NEB), 2 μl of T4 DNA ligase at 2000 U/ μl (NEB), 1 μl SUPERase ·In RNase Inhibitor (20 U/ μl) (Thermo Fisher Scientific), and incubated at room temperature for 15 min. RT was performed using a master mix containing 1 × First-Strand Buffer, 10 mM DTT, 0.5 mM dNTPs, and nuclease-free water. .. The master mix was added to the RT adapter-ligated RNA, followed by the addition of SuperScript III Reverse Transcriptase (Thermo Fisher Scientific).



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